Fig. 2. Frequency distributions of the eight Y-chromosome haplotypes for the 14 global populations, with their approximate geographic locations. The frequencies of the eight haplotypes are shown as colored pie charts (for color codes, see upper left insert). JP =Japanese. Han=Chinese
Only four Japanese populations exhibited ht1 (defined only by YAP+) at various frequencies (also see Table 1). The highest frequency (87.5%) was found in JP-Ainu, followed by JP-Okinawa (55.6%) living in the southwestern islands of Japan, JP-Honshu (36.6%), and JP-Kyushu (27.9%). The ht2 haplotype (defined by YAP+/M15+) was found in only two males, one each from Thais and Thai-Khmers; ht3 (defined by YAP+/SRY4064-A) was completely absent in the Asian populations examined, whereas Jewish in the Uzbekistan and African populations had this haplotype with a frequency of 28.3% and 100%, respectively. Thus, the YAP+ lineage was found in restricted populations among Asian populations, consistent with previous reports (Hammer and Horai 1995; Hammer et al. 1997; Shinka et al. 1999).
The ht4 haplotype (defined only by M9-G) was widely distributed among north, east, and southeast Asian populations, except for the Ainu. This haplotype was frequent (60.5%) in overall Asian populations (Table 1). Among them, the Han Chinese and southeast Asian populations were characterized by high frequencies ranging from 81.0% to 96.0%. In contrast to ht4, ht5 (defined by M9-G/DYS257108-A) and ht6 (defined by M9-G/DYS257108-A/SRY10831-A) were small contributors to Asian populations. The highest frequency of ht5 was observed in Nivkhi (19.0%) and that of the ht6 in Thai-Khmers (10.8%). The ht5 haplotype is widely distributed among European, Asian, and Native American populations and is proposed to be one of the candidates for founder haplotypes in the Americas (Karafet et al. 1999). Furthermore, high frequencies of ht6 were observed in north Europe, central Asia, and India (Karafet et al. 1999). Thus, the presence of ht5 in Nivkhi may account for the founder effect of peopling of the Americas.